Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs1359919 chr13:71359323 A/T 2.14E-5 108 0 5 16.77 KM Plot
LAML rs137936780 chr6:134296520 TAAAG/T 0.000172 109 16.17 10.13 1 KM Plot
LAML rs138328653 chr17:30396697 C/T 4.46E-5 105 16.23 15.23 0 KM Plot
LAML rs138407286 chr13:111038641 TC/T 0.000109 109 13.1 22.37 0 KM Plot
LAML rs138589695 chr2:3142180 A/ACACACACATT 2.46E-5 106 0 8.17 15.7 KM Plot
LAML rs138695676 chr14:101208623 G/C 0.000156 110 16.7 10.17 0 KM Plot
LAML rs138787435 chr13:114955201 TCATATC/T 4.33E-6 107 13.15 17.2 0 KM Plot
LAML rs138805085 chr6:34472203 G/T 0.000168 106 16.27 8.1 0 KM Plot
LAML rs138965493 chr2:3146567 ACCACATTCTCCCTGCTCCCAGGCAGGGTGGCACCG/A 8.16E-5 110 15.23 14.7 0 KM Plot
LAML rs139021949 chr14:77875842 C/T 0.000164 111 13.15 20.27 1.02 KM Plot
LAML rs139062263 chr11:34300172 CCAGTCCTTGTT/C 0.000118 111 13.2 16.3 0 KM Plot
LAML rs1400772 chr4:16038342 T/C 0.000133 110 15.23 14.7 0 KM Plot
LAML rs140210968 chr5:25951092 C/T 0.000145 111 15.17 16.17 0 KM Plot
LAML rs140292266 chr11:58429583 T/TC 2.58E-5 111 18.75 11.13 4.58 KM Plot
LAML rs140407888 chr13:114928797 AAAAT/TAAAT 4.27E-5 109 13.15 19.33 2.55 KM Plot